Fabibacter pacificus strain CGMCC 1.12402

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Cytophagia

Order

Cytophagales

Family

Roseivirgaceae

Genus

Roseivirga

Description

Fabibacter pacificus strain CGMCC 1.12402 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is mesophilic, with an optimal growth temperature of 37°C, which positions it well within the temperature range favorable for many environmental and biological processes. The strain possesses a single replicon, indicating a streamlined genomic organization that may facilitate efficient replication and adaptation within its ecological niche. It is cataloged under the accession number FOIR00000000.1, which provides a reference point for genomic and taxonomic studies. The aerobic nature of Fabibacter pacificus suggests its reliance on oxygen for growth, which can have significant implications for its habitat. Typically, such organisms inhabit oxygen-rich environments, which can include marine ecosystems or soil profiles where oxygen is readily available. Understanding the growth conditions and metabolic requirements of this strain can provide insights into its ecological role and potential applications in biotechnological contexts, such as bioremediation or nutrient cycling. Overall, the traits of Fabibacter pacificus strain CGMCC 1.12402 highlight its adaptability to specific environmental conditions, making it a candidate for further research in microbial ecology and applications that leverage its metabolic capabilities.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassCytophagia
OrderCytophagales
FamilyRoseivirgaceae
GenusRoseivirga
SpeciesRoseivirga pacifica
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature37
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Fabibacter pacificus strain CGMCC 1.12402 genome assembly, contig:

Gene Summary

Adenine Count

1371905 bp

Thymine Count

1333517 bp

Guanine Count

958689 bp

Cytosine Count

996660 bp

Genome Length

4660771 bp

Protein-coding Genes

4021 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
stage ii sporulation protein e (spoiie)SAMN05216290_0996Not AvailableNegative1121299 - 112333278149.0
aspartyl-trna synthetaseSAMN05216290_0997Not AvailableNegative1123437 - 112518866280.1
trna(adenine34) deaminaseSAMN05216290_0998Not AvailablePositive1125269 - 112571816308.6
superoxide dismutase, fe-mn familySAMN05216290_0999Not AvailablePositive1125752 - 112635721965.4
protein of unknown functionSAMN05216290_1000Not AvailablePositive1126545 - 112849474620.1
transglutaminase-like superfamily proteinSAMN05216290_1001Not AvailablePositive1128496 - 113040072218.0
outer membrane protein ompaSAMN05216290_1002Not AvailableNegative1130451 - 113180050093.4
ammonium transporterSAMN05216290_1003Not AvailableNegative1132046 - 113339247222.2
excinuclease abc subunit bSAMN05216290_1004Not AvailableNegative1133648 - 113567276979.2
hypothetical proteinSAMN05216290_1005Not AvailableNegative1135755 - 113643225894.8

Displaying genes 1001 – 1010 of 4073 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.