Variovorax sp. YR750

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. YR750 is a rod-shaped bacterium characterized by a single replicon. This organism is part of the Variovorax genus, which is known for its diverse metabolic capabilities and ecological versatility. The specific accession number for Variovorax sp. YR750 is FOBJ00000000.1, which provides a reference point for genomic studies and further research into its properties. The rod shape of Variovorax sp. YR750 may influence its mobility and interaction with its environment, particularly in soil or aquatic ecosystems where such morphologies can enhance nutrient uptake and colonization efficiency. The presence of a single replicon suggests a streamlined genomic organization, which could be advantageous for adaptation to specific ecological niches. In the context of microbial ecology, Variovorax species are often involved in the degradation of various organic compounds, including pollutants. Their ability to metabolize different substrates can play a crucial role in bioremediation efforts, making them significant in the context of environmental sustainability. Understanding the traits of Variovorax sp. YR750, including its morphology and genomic structure, can provide insights into its potential applications in biotechnology and its role in nutrient cycling within ecosystems. The study of this bacterium may offer further understanding of microbial interactions and the ecological balance in diverse environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. YR750
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. YR750 genome assembly, contig: Ga0115525_158, whole

Gene Summary

Adenine Count

1320280 bp

Thymine Count

1317919 bp

Guanine Count

2724946 bp

Cytosine Count

2735970 bp

Genome Length

8099414 bp

Protein-coding Genes

7420 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative abc transport system permease proteinSAMN05518845_112248Not AvailableNegative5271447 - 527407490944.6
cubico group peptidase, beta-lactamase class c familySAMN05518845_112249Not AvailablePositive5274112 - 527556351059.8
adp-ribosyl-[dinitrogen reductase] hydrolaseSAMN05518845_112250Not AvailableNegative5275573 - 527647531440.2
hypothetical proteinSAMN05518845_112251Not AvailableNegative5276472 - 527704421037.1
protein of unknown functionSAMN05518845_112252Not AvailableNegative5277041 - 527767023932.6
tigr02452 family proteinSAMN05518845_112253Not AvailableNegative5277667 - 527849429913.6
8-oxo-dgtp diphosphataseSAMN05518845_112254Not AvailablePositive5278618 - 527934326749.2
rna polymerase sigma-70 factor, ecf subfamilySAMN05518845_112255Not AvailableNegative5279353 - 528058543970.7
uncharacterized conserved proteinSAMN05518845_112256Not AvailableNegative5280582 - 528094713046.4
predicted homoserine dehydrogenase, contains c-terminal saf domainSAMN05518845_112257Not AvailableNegative5281116 - 528248949214.8

Displaying genes 4891 – 4900 of 7483 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.