Variovorax sp. YR750

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. YR750 is a rod-shaped bacterium characterized by a single replicon. This organism is part of the Variovorax genus, which is known for its diverse metabolic capabilities and ecological versatility. The specific accession number for Variovorax sp. YR750 is FOBJ00000000.1, which provides a reference point for genomic studies and further research into its properties. The rod shape of Variovorax sp. YR750 may influence its mobility and interaction with its environment, particularly in soil or aquatic ecosystems where such morphologies can enhance nutrient uptake and colonization efficiency. The presence of a single replicon suggests a streamlined genomic organization, which could be advantageous for adaptation to specific ecological niches. In the context of microbial ecology, Variovorax species are often involved in the degradation of various organic compounds, including pollutants. Their ability to metabolize different substrates can play a crucial role in bioremediation efforts, making them significant in the context of environmental sustainability. Understanding the traits of Variovorax sp. YR750, including its morphology and genomic structure, can provide insights into its potential applications in biotechnology and its role in nutrient cycling within ecosystems. The study of this bacterium may offer further understanding of microbial interactions and the ecological balance in diverse environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. YR750
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. YR750 genome assembly, contig: Ga0115525_158, whole

Gene Summary

Adenine Count

1320280 bp

Thymine Count

1317919 bp

Guanine Count

2724946 bp

Cytosine Count

2735970 bp

Genome Length

8099414 bp

Protein-coding Genes

7420 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN05518845_105325Not AvailablePositive2883376 - 288417926737.4
saccharopine dehydrogenase nadp binding domain-containing proteinSAMN05518845_105326Not AvailablePositive2884204 - 288534040312.3
acyl-coa synthetase (amp-forming)/amp-acid ligase iiSAMN05518845_105327Not AvailablePositive2885345 - 288689556054.1
long-chain acyl-coa synthetaseSAMN05518845_105328Not AvailableNegative2886880 - 288849358152.4
uncharacterized membrane proteinSAMN05518845_105329Not AvailablePositive2888675 - 288925621119.8
eama-like transporter family proteinSAMN05518845_105330Not AvailableNegative2889276 - 289024433307.6
methylated-dna-[protein]-cysteine s-methyltransferaseSAMN05518845_105331Not AvailableNegative2890285 - 289078217594.0
dna-3-methyladenine glycosylase iiSAMN05518845_105332Not AvailableNegative2890789 - 289239957178.5
phosphomannomutaseSAMN05518845_105333Not AvailablePositive2892513 - 289389548502.3
3-deoxy-d-manno-octulosonic-acid transferaseSAMN05518845_105334Not AvailablePositive2894059 - 289544449761.7

Displaying genes 2661 – 2670 of 7483 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.