Variovorax sp. YR750

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. YR750 is a rod-shaped bacterium characterized by a single replicon. This organism is part of the Variovorax genus, which is known for its diverse metabolic capabilities and ecological versatility. The specific accession number for Variovorax sp. YR750 is FOBJ00000000.1, which provides a reference point for genomic studies and further research into its properties. The rod shape of Variovorax sp. YR750 may influence its mobility and interaction with its environment, particularly in soil or aquatic ecosystems where such morphologies can enhance nutrient uptake and colonization efficiency. The presence of a single replicon suggests a streamlined genomic organization, which could be advantageous for adaptation to specific ecological niches. In the context of microbial ecology, Variovorax species are often involved in the degradation of various organic compounds, including pollutants. Their ability to metabolize different substrates can play a crucial role in bioremediation efforts, making them significant in the context of environmental sustainability. Understanding the traits of Variovorax sp. YR750, including its morphology and genomic structure, can provide insights into its potential applications in biotechnology and its role in nutrient cycling within ecosystems. The study of this bacterium may offer further understanding of microbial interactions and the ecological balance in diverse environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. YR750
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. YR750 genome assembly, contig: Ga0115525_158, whole

Gene Summary

Adenine Count

1320280 bp

Thymine Count

1317919 bp

Guanine Count

2724946 bp

Cytosine Count

2735970 bp

Genome Length

8099414 bp

Protein-coding Genes

7420 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap transporter, dctm subunitSAMN05518845_105215Not AvailableNegative2743716 - 274502947209.5
trap-type c4-dicarboxylate transport system, small permease componentSAMN05518845_105216Not AvailableNegative2745069 - 274560219598.1
trap-type c4-dicarboxylate transport system, substrate-binding proteinSAMN05518845_105217Not AvailableNegative2745692 - 274666034736.6
competence protein comeaSAMN05518845_105218Not AvailableNegative2746816 - 274714511518.0
lipopolysaccharide biosynthesis regulator ycim, contains six tpr domains and a predicted metal-binding c-terminal domainSAMN05518845_105219Not AvailableNegative2747285 - 274845443667.4
uncharacterized integral membrane proteinSAMN05518845_105220Not AvailableNegative2748444 - 274878211808.4
integration host factor subunit betaSAMN05518845_105221Not AvailableNegative2748851 - 274918912395.8
ssu ribosomal protein s1pSAMN05518845_105222Not AvailableNegative2749268 - 275095661809.8
3-phosphoshikimate 1-carboxyvinyltransferaseSAMN05518845_105223Not AvailableNegative2751197 - 275320971726.1
prephenate dehydrogenaseSAMN05518845_105224Not AvailableNegative2753211 - 275410131443.7

Displaying genes 2551 – 2560 of 7483 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.