Variovorax sp. YR750

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. YR750 is a rod-shaped bacterium characterized by a single replicon. This organism is part of the Variovorax genus, which is known for its diverse metabolic capabilities and ecological versatility. The specific accession number for Variovorax sp. YR750 is FOBJ00000000.1, which provides a reference point for genomic studies and further research into its properties. The rod shape of Variovorax sp. YR750 may influence its mobility and interaction with its environment, particularly in soil or aquatic ecosystems where such morphologies can enhance nutrient uptake and colonization efficiency. The presence of a single replicon suggests a streamlined genomic organization, which could be advantageous for adaptation to specific ecological niches. In the context of microbial ecology, Variovorax species are often involved in the degradation of various organic compounds, including pollutants. Their ability to metabolize different substrates can play a crucial role in bioremediation efforts, making them significant in the context of environmental sustainability. Understanding the traits of Variovorax sp. YR750, including its morphology and genomic structure, can provide insights into its potential applications in biotechnology and its role in nutrient cycling within ecosystems. The study of this bacterium may offer further understanding of microbial interactions and the ecological balance in diverse environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. YR750
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. YR750 genome assembly, contig: Ga0115525_158, whole

Gene Summary

Adenine Count

1320280 bp

Thymine Count

1317919 bp

Guanine Count

2724946 bp

Cytosine Count

2735970 bp

Genome Length

8099414 bp

Protein-coding Genes

7420 genes

Non-Coding Genes

63 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
salicylate 5-hydroxylase small subunitSAMN05518845_103178Not AvailablePositive1569995 - 157046518242.5
naphthalene 1,2-dioxygenase system ferredoxin subunitSAMN05518845_103179Not AvailablePositive1570482 - 157080811568.4
3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunitSAMN05518845_103180Not AvailablePositive1570826 - 157205243687.2
protein of unknown functionSAMN05518845_103181Not AvailableNegative1572110 - 15723619057.68
uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domainsSAMN05518845_103182Not AvailableNegative1572358 - 157322731321.4
transcriptional regulator, lysr familySAMN05518845_103183Not AvailablePositive1573354 - 157425332619.9
dna-binding transcriptional regulator, lysr familySAMN05518845_103184Not AvailableNegative1574272 - 157523435423.8
2,5-diketo-d-gluconate reductase aSAMN05518845_103185Not AvailablePositive1575360 - 157621131955.2
major facilitator superfamily proteinSAMN05518845_103186Not AvailablePositive1576221 - 157695224907.7
major facilitator superfamily proteinSAMN05518845_103187Not AvailablePositive1576952 - 157765924578.9

Displaying genes 1471 – 1480 of 7483 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.