Pseudosphingobacterium domesticum strain DSM 18733

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Olivibacter

Description

Pseudosphingobacterium domesticum strain DSM 18733 is characterized by having a single replicon, which indicates a streamlined genomic organization. The strain is cataloged under the accession number FOAF00000000.1, facilitating its identification and study in microbiological research. As a member of the Pseudosphingobacterium genus, DSM 18733 contributes to the broader understanding of microbial diversity and functional capabilities within its ecological niches. While specific metabolic pathways or ecological roles of this strain are not detailed in the provided traits, the presence of a single replicon may suggest potential advantages in genomic stability and adaptability to various environments. In summary, Pseudosphingobacterium domesticum strain DSM 18733, with its single replicon and specific genomic identification, underscores the importance of microbial strains in understanding ecological interactions and evolutionary adaptations in their respective habitats. Further exploration of its physiological properties and interactions could provide deeper insights into its role in the environment.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusOlivibacter
SpeciesOlivibacter domesticus
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudosphingobacterium domesticum strain DSM 18733 genome

Gene Summary

Adenine Count

2060102 bp

Thymine Count

2079423 bp

Guanine Count

1274645 bp

Cytosine Count

1365528 bp

Genome Length

6780495 bp

Protein-coding Genes

5599 genes

Non-Coding Genes

48 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
thiol-disulfide isomerase or thioredoxinSAMN05661044_03415Not AvailableNegative4044515 - 404598456342.4
predicted dehydrogenaseSAMN05661044_03416Not AvailableNegative4046153 - 404757452618.9
type 1 glutamine amidotransferase (gatase1)SAMN05661044_03417Not AvailableNegative4047616 - 404842530742.2
transcriptional regulator, laci familySAMN05661044_03418Not AvailablePositive4049080 - 405009638099.3
methane oxygenase pmoaSAMN05661044_03419Not AvailableNegative4050098 - 405105436359.2
starch-binding associating with outer membraneSAMN05661044_03420Not AvailableNegative4051116 - 405295769400.9
tonb-linked outer membrane protein, susc/raga familySAMN05661044_03421Not AvailableNegative4052990 - 4056124118510.0
starch-binding associating with outer membraneSAMN05661044_03422Not AvailableNegative4056468 - 405810561159.8
tonb-linked outer membrane protein, susc/raga familySAMN05661044_03423Not AvailableNegative4058146 - 4061124109489.0
alpha-l-fucosidase 2SAMN05661044_03424Not AvailableNegative4061567 - 406395189187.7

Displaying genes 3411 – 3420 of 5647 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.