Aquimarina amphilecti strain DSM 25232

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Flavobacteriaceae

Genus

Aquimarina

Description

Aquimarina amphilecti strain DSM 25232 is a Gram-negative bacterium characterized by its rod-shaped morphology. This species belongs to the genus Aquimarina, which is known for its presence in marine environments. The strain has a notable genetic characteristic, exhibiting a single replicon, which is a feature that can influence its replication and genomic stability. The genome of Aquimarina amphilecti strain DSM 25232 is documented under the accession number FOAB00000000.1, providing a resource for further genomic studies and comparative analysis with related species within the genus. The ecological significance of Aquimarina amphilecti may be connected to its marine habitat, where it could play a role in nutrient cycling and interactions with other microbial entities. Understanding the traits of this strain can inform research on marine microbiomes and the ecological functions they perform, highlighting the intricate relationships within these ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyFlavobacteriaceae
GenusAquimarina
SpeciesAquimarina amphilecti
Strainstrain DSM 25232

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Aquimarina amphilecti strain DSM 25232 genome assembly, contig:

Gene Summary

Adenine Count

1802876 bp

Thymine Count

1808296 bp

Guanine Count

855474 bp

Cytosine Count

841061 bp

Genome Length

5309872 bp

Protein-coding Genes

4647 genes

Non-Coding Genes

56 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
quinol:cytochrome c oxidoreductase iron-sulfur protein precursorSAMN04487910_2012Not AvailableNegative2233303 - 2236416113121.0
quinol:cytochrome c oxidoreductase pentaheme cytochrome subunitSAMN04487910_2013Not AvailableNegative2236474 - 223779048500.2
sporulation related domain-containing proteinSAMN04487910_2014Not AvailablePositive2238014 - 223846617436.9
bacterial translation initiation factor 2 (bif-2)SAMN04487910_2015Not AvailableNegative2238542 - 2241349102895.0
nusa antitermination factorSAMN04487910_2016Not AvailableNegative2241395 - 224262746457.3
ribosome maturation factor rimpSAMN04487910_2017Not AvailableNegative2242640 - 224314318636.6
nucleotide-binding universal stress protein, uspa familySAMN04487910_2018Not AvailablePositive2243381 - 224421430954.2
Trna-glnNot AvailableNot AvailablePositive2244270 - 2244345Not Available
protein of unknown functionSAMN04487910_2020Not AvailablePositive2244562 - 2247864127707.0
peptidoglycan/xylan/chitin deacetylase, pgda/cda1 familySAMN04487910_2021Not AvailablePositive2247912 - 224855024882.1

Displaying genes 2001 – 2010 of 4703 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.