Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna methyltransferase, trmh family | SAMN05421847_1011 | Not Available | Negative | 1034638 - 1035405 | 28721.3 |
| dna recombination protein rmuc | SAMN05421847_1012 | Not Available | Negative | 1035419 - 1036774 | 51470.6 |
| putative beta-barrel porin-2, ompl-like. bbp2 | SAMN05421847_1013 | Not Available | Negative | 1036888 - 1037964 | 39941.7 |
| ammonium transporter | SAMN05421847_1014 | Not Available | Negative | 1038069 - 1039385 | 47010.4 |
| nicotinate phosphoribosyltransferase | SAMN05421847_1015 | Not Available | Negative | 1039776 - 1040954 | 45218.4 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421847_1016 | Not Available | Negative | 1041078 - 1042715 | 60707.0 |
| ssu ribosomal protein s12p | SAMN05421847_1017 | Not Available | Positive | 1042875 - 1043276 | 14448.8 |
| small subunit ribosomal protein s7 | SAMN05421847_1018 | Not Available | Positive | 1043299 - 1043775 | 18032.1 |
| elongation factor g | SAMN05421847_1019 | Not Available | Positive | 1043779 - 1045896 | 77988.8 |
| ssu ribosomal protein s10p | SAMN05421847_1020 | Not Available | Positive | 1045915 - 1046220 | 11383.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
