Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lsu ribosomal protein l17p | SAMN05421847_0960 | Not Available | Negative | 998570 - 999163 | 22013.2 |
| dna-directed rna polymerase subunit alpha | SAMN05421847_0961 | Not Available | Negative | 999170 - 1000165 | 36875.4 |
| small subunit ribosomal protein s4 | SAMN05421847_0962 | Not Available | Negative | 1000194 - 1000802 | 22972.5 |
| ssu ribosomal protein s11p | SAMN05421847_0963 | Not Available | Negative | 1000900 - 1001289 | 14031.2 |
| small subunit ribosomal protein s13 | SAMN05421847_0964 | Not Available | Negative | 1001302 - 1001679 | 14157.4 |
| lsu ribosomal protein l36p | SAMN05421847_0965 | Not Available | Negative | 1001683 - 1001799 | 4457.73 |
| translation initiation factor if-1 | SAMN05421847_0966 | Not Available | Negative | 1001987 - 1002202 | 8239.17 |
| protein translocase subunit secy/sec61 alpha | SAMN05421847_0967 | Not Available | Negative | 1002206 - 1003585 | 50271.6 |
| lsu ribosomal protein l15p | SAMN05421847_0968 | Not Available | Negative | 1003641 - 1004087 | 15891.3 |
| large subunit ribosomal protein l30 | SAMN05421847_0969 | Not Available | Negative | 1004175 - 1004351 | 6432.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
