Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyltransferase (gnat) domain-containing protein | SAMN05421847_0939 | Not Available | Positive | 974656 - 975096 | 16404.9 |
| predicted amino acid racemase | SAMN05421847_0940 | Not Available | Positive | 975096 - 976166 | 40567.6 |
| hypothetical protein | SAMN05421847_0941 | Not Available | Positive | 976265 - 976597 | 12481.6 |
| hypothetical protein | SAMN05421847_0942 | Not Available | Negative | 976605 - 977528 | 34720.5 |
| copper homeostasis protein | SAMN05421847_0943 | Not Available | Positive | 977617 - 978279 | 25247.3 |
| homoserine dehydrogenase | SAMN05421847_0944 | Not Available | Negative | 978442 - 979635 | 45131.9 |
| homoserine o-acetyltransferase | SAMN05421847_0945 | Not Available | Negative | 979653 - 980600 | 35975.8 |
| o-acetylhomoserine sulfhydrylase | SAMN05421847_0946 | Not Available | Negative | 980617 - 981912 | 46858.4 |
| n-dimethylarginine dimethylaminohydrolase | SAMN05421847_0948 | Not Available | Negative | 982411 - 983325 | 35536.2 |
| citrate synthase | SAMN05421847_0949 | Not Available | Negative | 983758 - 985044 | 48267.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
