Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| exonuclease recj | SAMN05421847_0929 | Not Available | Positive | 959087 - 960799 | 63854.1 |
| nicotinate-nucleotide adenylyltransferase | SAMN05421847_0930 | Not Available | Positive | 960860 - 961441 | 22865.8 |
| integral membrane protein | SAMN05421847_0931 | Not Available | Positive | 961507 - 961848 | 13573.9 |
| uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domains | SAMN05421847_0932 | Not Available | Negative | 961914 - 963338 | 54799.9 |
| hypothetical protein | SAMN05421847_0933 | Not Available | Negative | 963406 - 963906 | 19734.6 |
| hupe / urej protein | SAMN05421847_0934 | Not Available | Positive | 963961 - 964548 | 22148.3 |
| hypothetical protein | SAMN05421847_0935 | Not Available | Positive | 964622 - 966991 | 90525.5 |
| outer membrane receptor proteins, mostly fe transport | SAMN05421847_0936 | Not Available | Positive | 967527 - 969728 | 83784.8 |
| tetratricopeptide repeat-containing protein | SAMN05421847_0937 | Not Available | Negative | 969828 - 971036 | 47155.2 |
| methylmalonyl-coa mutase | SAMN05421847_0938 | Not Available | Negative | 971097 - 974471 | 126357.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
