Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421847_0908 | Not Available | Positive | 939767 - 940576 | 31322.1 |
| phosphatidylglycerol lysyltransferase | SAMN05421847_0909 | Not Available | Positive | 940666 - 943269 | 99033.7 |
| virulence protein (virj) | SAMN05421847_0910 | Not Available | Positive | 943321 - 944010 | 26034.8 |
| trna (guanine-n7-)-methyltransferase | SAMN05421847_0911 | Not Available | Positive | 944098 - 944775 | 26132.3 |
| hypothetical protein | SAMN05421847_0912 | Not Available | Positive | 944775 - 945410 | 24320.7 |
| papain-like cysteine protease avrrpt2 | SAMN05421847_0913 | Not Available | Negative | 945566 - 946054 | 18591.4 |
| small subunit ribosomal protein s2 | SAMN05421847_0914 | Not Available | Negative | 946239 - 947000 | 28275.3 |
| ssu ribosomal protein s9p | SAMN05421847_0915 | Not Available | Negative | 947189 - 947575 | 14278.5 |
| lsu ribosomal protein l13p | SAMN05421847_0916 | Not Available | Negative | 947583 - 948038 | 16927.3 |
| hypothetical protein | SAMN05421847_0917 | Not Available | Negative | 948035 - 948160 | 4872.13 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
