Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna1val (adenine37-n6)-methyltransferase | SAMN05421847_0887 | Not Available | Negative | 915431 - 916126 | 26125.3 |
| hamp domain-containing protein | SAMN05421847_0888 | Not Available | Negative | 916133 - 917587 | 55821.0 |
| riboflavin synthase alpha chain | SAMN05421847_0889 | Not Available | Negative | 917568 - 918173 | 22359.6 |
| 4-hydroxythreonine-4-phosphate dehydrogenase | SAMN05421847_0891 | Not Available | Positive | 918379 - 919452 | 40049.0 |
| uncharacterized acr, cog1399 | SAMN05421847_0892 | Not Available | Positive | 919549 - 920070 | 20244.9 |
| large subunit ribosomal protein l32 | SAMN05421847_0893 | Not Available | Positive | 920122 - 920325 | 8088.62 |
| acetyl-coa carboxylase biotin carboxyl carrier protein | SAMN05421847_0894 | Not Available | Positive | 920433 - 920912 | 17553.9 |
| acetyl-coa carboxylase, biotin carboxylase subunit | SAMN05421847_0895 | Not Available | Positive | 920993 - 922348 | 50280.2 |
| ornithine--oxo-acid transaminase | SAMN05421847_0896 | Not Available | Positive | 922399 - 923673 | 46414.6 |
| glycosyl transferase family 2 | SAMN05421847_0897 | Not Available | Positive | 923715 - 924482 | 30004.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
