Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| outer membrane transport energization protein exbd | SAMN05421847_0877 | Not Available | Positive | 906286 - 906804 | 19575.8 |
| rhodanese-related sulfurtransferase | SAMN05421847_0878 | Not Available | Negative | 906864 - 907235 | 13496.5 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN05421847_0879 | Not Available | Positive | 907552 - 908334 | 29587.2 |
| hypothetical protein | SAMN05421847_0880 | Not Available | Positive | 908868 - 909227 | 13307.0 |
| microcystin-dependent protein | SAMN05421847_0881 | Not Available | Positive | 909257 - 909796 | 18565.5 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421847_0882 | Not Available | Positive | 909945 - 910970 | 35707.9 |
| sulfate permease, sulp family | SAMN05421847_0883 | Not Available | Negative | 911261 - 912784 | 55064.6 |
| phosphoesterase recj domain-containing protein | SAMN05421847_0884 | Not Available | Negative | 912832 - 913836 | 37576.8 |
| lsu ribosomal protein l34p | SAMN05421847_0885 | Not Available | Positive | 914211 - 914369 | 6055.42 |
| cell division transport system atp-binding protein | SAMN05421847_0886 | Not Available | Positive | 914716 - 915426 | 26405.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
