Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein tonb | SAMN05421847_0856 | Not Available | Negative | 883847 - 884689 | 31243.3 |
| biopolymer transport protein exbd | SAMN05421847_0857 | Not Available | Negative | 884708 - 885280 | 21413.8 |
| biopolymer transport protein exbd | SAMN05421847_0858 | Not Available | Negative | 885284 - 885889 | 22620.6 |
| biopolymer transport protein exbb | SAMN05421847_0859 | Not Available | Negative | 885961 - 886827 | 30847.8 |
| leucyl-trna synthetase | SAMN05421847_0860 | Not Available | Negative | 887104 - 890130 | 117199.0 |
| peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domains | SAMN05421847_0862 | Not Available | Positive | 890634 - 891611 | 37896.2 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN05421847_0863 | Not Available | Positive | 891638 - 892393 | 29513.4 |
| hypothetical protein | SAMN05421847_0864 | Not Available | Positive | 892393 - 893022 | 25046.6 |
| 3-deoxy-d-manno-octulosonic-acid transferase | SAMN05421847_0865 | Not Available | Negative | 893105 - 894349 | 47858.7 |
| mannose-6-phosphate isomerase, cupin superfamily | SAMN05421847_0866 | Not Available | Negative | 894354 - 894692 | 13073.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
