Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| chaperonin groel | SAMN05421847_0730 | Not Available | Positive | 756424 - 758049 | 57341.1 |
| hypothetical protein | SAMN05421847_0732 | Not Available | Positive | 758457 - 758798 | 12883.6 |
| dna (cytosine-5)-methyltransferase 1 | SAMN05421847_0733 | Not Available | Positive | 758912 - 760363 | 55923.2 |
| abc-type multidrug transport system, atpase and permease component | SAMN05421847_0734 | Not Available | Negative | 760380 - 762116 | 65752.8 |
| trna pseudouridine38-40 synthase | SAMN05421847_0735 | Not Available | Negative | 762530 - 763267 | 28309.8 |
| hypothetical protein | SAMN05421847_0737 | Not Available | Positive | 763449 - 763940 | 18721.8 |
| smr domain-containing protein | SAMN05421847_0738 | Not Available | Positive | 764032 - 764526 | 18987.5 |
| protein of unknown function | SAMN05421847_0739 | Not Available | Positive | 764725 - 765441 | 28337.0 |
| 16s rrna (guanine(966)-n(2))-methyltransferase rsmd | SAMN05421847_0740 | Not Available | Positive | 765513 - 766067 | 21344.4 |
| ca-activated chloride channel family protein | SAMN05421847_0741 | Not Available | Positive | 766203 - 767210 | 37470.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
