Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN05421847_0719 | Not Available | Positive | 744678 - 746081 | 51800.8 |
| protein of unknown function | SAMN05421847_0721 | Not Available | Positive | 746294 - 746926 | 24639.6 |
| pp_00695 | SAMN05421847_0722 | Not Available | Positive | 747116 - 747703 | Not Available |
| glycosyltransferase involved in cell wall bisynthesis | SAMN05421847_0723 | Not Available | Negative | 747705 - 748925 | 47220.9 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | SAMN05421847_0724 | Not Available | Positive | 749090 - 749887 | 30285.8 |
| lysozyme | SAMN05421847_0725 | Not Available | Negative | 749884 - 750735 | 32048.2 |
| udp-n-acetylmuramate: l-alanyl-gamma-d-glutamyl-meso-diaminopimelate ligase | SAMN05421847_0726 | Not Available | Positive | 750843 - 752195 | 51226.7 |
| carboxypepd_reg-like domain-containing protein | SAMN05421847_0727 | Not Available | Negative | 752824 - 753957 | 43291.1 |
| excinuclease abc subunit c | SAMN05421847_0728 | Not Available | Negative | 753958 - 755751 | 69461.4 |
| chaperonin groes | SAMN05421847_0729 | Not Available | Positive | 756031 - 756309 | 9792.83 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
