Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nadh dehydrogenase subunit a | SAMN05421847_0059 | Not Available | Negative | 53616 - 53981 | 13626.7 |
| hypothetical protein | SAMN05421847_0060 | Not Available | Negative | 54106 - 54279 | 6624.56 |
| hypothetical protein | SAMN05421847_0061 | Not Available | Negative | 54280 - 55404 | 44055.2 |
| hypothetical protein | SAMN05421847_0062 | Not Available | Positive | 55405 - 56202 | 29306.9 |
| uncharacterized protein, yigz family | SAMN05421847_0063 | Not Available | Negative | 56239 - 56853 | 22917.6 |
| diaminohydroxyphosphoribosylaminopyrimidine deaminase | SAMN05421847_0064 | Not Available | Negative | 56860 - 57909 | 39853.2 |
| hypothetical protein | SAMN05421847_0065 | Not Available | Negative | 58066 - 58662 | 22738.2 |
| protein of unknown function | SAMN05421847_0066 | Not Available | Negative | 58760 - 60739 | 77414.6 |
| shikimate dehydrogenase | SAMN05421847_0067 | Not Available | Negative | 60824 - 61555 | 27923.5 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421847_0068 | Not Available | Negative | 61619 - 63679 | 73862.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
