Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transketolase | SAMN05421847_0678 | Not Available | Positive | 692375 - 693226 | 30930.8 |
| transketolase | SAMN05421847_0680 | Not Available | Positive | 693378 - 694325 | 34098.3 |
| hypothetical protein | SAMN05421847_0681 | Not Available | Negative | 694439 - 694582 | 5572.41 |
| hypothetical protein | SAMN05421847_0682 | Not Available | Positive | 694769 - 695356 | 22320.5 |
| putative transport protein | SAMN05421847_0683 | Not Available | Negative | 695399 - 697087 | 62247.3 |
| hypothetical protein | SAMN05421847_0684 | Not Available | Negative | 697289 - 698851 | 57850.5 |
| dna-binding transcriptional regulator, lysr family | SAMN05421847_0685 | Not Available | Negative | 698953 - 699876 | 34916.7 |
| isocitrate dehydrogenase | SAMN05421847_0686 | Not Available | Positive | 699970 - 701406 | 53194.0 |
| hypothetical protein | SAMN05421847_0687 | Not Available | Positive | 701481 - 701777 | 11231.4 |
| alanine racemase | SAMN05421847_0688 | Not Available | Negative | 701788 - 702942 | 43846.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
