Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase-3 subunit epsilon | SAMN05421847_0638 | Not Available | Positive | 648938 - 649495 | 20930.3 |
| apag protein | SAMN05421847_0639 | Not Available | Negative | 649521 - 649907 | 14617.6 |
| 2-oxoglutarate dehydrogenase e2 component | SAMN05421847_0640 | Not Available | Negative | 650006 - 651241 | 44490.4 |
| 2-oxoglutarate dehydrogenase e1 component | SAMN05421847_0641 | Not Available | Negative | 651296 - 654094 | 106733.0 |
| hypothetical protein | SAMN05421847_0642 | Not Available | Negative | 654303 - 655337 | 40201.1 |
| glucose-1-phosphate adenylyltransferase | SAMN05421847_0643 | Not Available | Negative | 655446 - 656714 | 47195.1 |
| starch synthase | SAMN05421847_0644 | Not Available | Negative | 656855 - 658261 | 53593.5 |
| 1,4-alpha-glucan branching enzyme | SAMN05421847_0645 | Not Available | Negative | 658265 - 660253 | 77526.9 |
| predicted hydrolase of the alpha/beta superfamily | SAMN05421847_0646 | Not Available | Positive | 660440 - 661543 | 43482.7 |
| leucyl aminopeptidase | SAMN05421847_0647 | Not Available | Positive | 661551 - 662966 | 52444.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
