Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN05421847_0618 | Not Available | Positive | 628519 - 628809 | 11556.2 |
| monofunctional biosynthetic peptidoglycan transglycosylase | SAMN05421847_0619 | Not Available | Negative | 628818 - 629462 | 24671.1 |
| iron complex transport system substrate-binding protein | SAMN05421847_0620 | Not Available | Negative | 629581 - 630627 | 40137.5 |
| Trna-arg | Not Available | Not Available | Positive | 630674 - 630747 | Not Available |
| protein involved in gliding motility glda | SAMN05421847_0622 | Not Available | Positive | 630883 - 631584 | 25970.8 |
| amidophosphoribosyltransferase | SAMN05421847_0623 | Not Available | Negative | 631737 - 633218 | 55188.5 |
| phosphoribosylaminoimidazole-succinocarboxamide synthase | SAMN05421847_0624 | Not Available | Negative | 633259 - 633978 | 27624.5 |
| protein of unknown function | SAMN05421847_0625 | Not Available | Negative | 633997 - 634698 | 27318.2 |
| satd family (satd) | SAMN05421847_0626 | Not Available | Negative | 634695 - 635303 | 23275.9 |
| phosphoribosylformylglycinamidine synthase | SAMN05421847_0627 | Not Available | Negative | 635398 - 639087 | 137035.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
