Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hsp20 family protein | SAMN05421847_0546 | Not Available | Negative | 555030 - 555506 | 17885.0 |
| flavin containing amine oxidoreductase | SAMN05421847_0547 | Not Available | Positive | 555784 - 557022 | 45882.6 |
| glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-n-acetylglucosamine synthase | SAMN05421847_0548 | Not Available | Positive | 557449 - 560892 | 130371.0 |
| hypothetical protein | SAMN05421847_0549 | Not Available | Positive | 560945 - 561385 | 17024.9 |
| zn-dependent protease with chaperone function | SAMN05421847_0550 | Not Available | Positive | 561387 - 563453 | 80556.1 |
| ribosomal large subunit pseudouridine synthase f | SAMN05421847_0551 | Not Available | Negative | 563450 - 564172 | 27796.9 |
| hypothetical protein | SAMN05421847_0552 | Not Available | Negative | 564178 - 564777 | 22619.2 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421847_0553 | Not Available | Negative | 564984 - 565892 | 32926.2 |
| trna pseudouridine55 synthase | SAMN05421847_0554 | Not Available | Negative | 566054 - 566743 | 25928.4 |
| hypothetical protein | SAMN05421847_0555 | Not Available | Negative | 566746 - 567252 | 20138.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
