Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ring-1,2-phenylacetyl-coa epoxidase subunit paae | SAMN05421847_0536 | Not Available | Negative | 544066 - 545187 | 43195.7 |
| thiol-disulfide isomerase or thioredoxin | SAMN05421847_0537 | Not Available | Positive | 545221 - 545784 | 21217.3 |
| iron complex transport system permease protein | SAMN05421847_0538 | Not Available | Positive | 545853 - 546836 | 36102.4 |
| iron complex transport system atp-binding protein | SAMN05421847_0539 | Not Available | Positive | 547152 - 548075 | 35213.8 |
| dna-binding transcriptional regulator, marr family | SAMN05421847_0540 | Not Available | Positive | 548238 - 548690 | 17123.0 |
| 3-hydroxyacyl-coa dehydrogenase | SAMN05421847_0541 | Not Available | Positive | 548696 - 551101 | 89048.7 |
| four helix bundle protein | SAMN05421847_0542 | Not Available | Positive | 551123 - 551485 | 13929.2 |
| acetyl-coa acyltransferase | SAMN05421847_0543 | Not Available | Positive | 551532 - 552716 | 42346.2 |
| four helix bundle protein | SAMN05421847_0544 | Not Available | Positive | 552751 - 553038 | 10934.2 |
| acyl-coa dehydrogenase | SAMN05421847_0545 | Not Available | Positive | 553160 - 554929 | 64936.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
