Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421847_0505 | Not Available | Negative | 513531 - 514577 | 39417.0 |
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN05421847_0506 | Not Available | Negative | 514642 - 516336 | 60792.6 |
| nicotinamide mononucleotide transporter | SAMN05421847_0507 | Not Available | Positive | 516498 - 517166 | 26309.6 |
| diaminopimelate epimerase | SAMN05421847_0508 | Not Available | Positive | 517345 - 518103 | 28480.8 |
| upf0755 protein | SAMN05421847_0509 | Not Available | Positive | 518104 - 519129 | 39111.8 |
| outer membrane receptor proteins, mostly fe transport | SAMN05421847_0510 | Not Available | Positive | 519241 - 521787 | 93921.8 |
| udp-glucose 4-epimerase | SAMN05421847_0511 | Not Available | Negative | 521905 - 522924 | 38369.8 |
| octaprenyl-diphosphate synthase | SAMN05421847_0512 | Not Available | Negative | 523049 - 524026 | 37505.0 |
| hypothetical protein | SAMN05421847_0513 | Not Available | Negative | 524104 - 524967 | 33295.2 |
| 23s rrna (adenine2503-c2)-methyltransferase | SAMN05421847_0514 | Not Available | Negative | 525099 - 526133 | 39070.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
