Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 16s rrna (cytidine1402-2'-o)-methyltransferase | SAMN05421847_0494 | Not Available | Negative | 503574 - 504272 | 26394.3 |
| protein-tyrosine phosphatase | SAMN05421847_0495 | Not Available | Negative | 504370 - 504804 | 16162.6 |
| chromosomal replication initiator protein dnaa | SAMN05421847_0496 | Not Available | Negative | 504887 - 506341 | 55077.7 |
| acyl-coa thioester hydrolase | SAMN05421847_0497 | Not Available | Positive | 506476 - 506886 | 16464.0 |
| dipeptidase e | SAMN05421847_0498 | Not Available | Negative | 506950 - 507642 | 25892.8 |
| transaldolase | SAMN05421847_0500 | Not Available | Positive | 508467 - 509120 | 23598.6 |
| signal transducer regulating beta-lactamase production, contains metallopeptidase domain | SAMN05421847_0501 | Not Available | Negative | 509216 - 510910 | 65268.2 |
| predicted transcriptional regulator | SAMN05421847_0502 | Not Available | Negative | 510910 - 511275 | 14287.1 |
| glpgli family protein | SAMN05421847_0503 | Not Available | Negative | 511624 - 512490 | 33478.8 |
| glpgli family protein | SAMN05421847_0504 | Not Available | Negative | 512500 - 513363 | 33216.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
