Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| adp-ribose pyrophosphatase yjhb, nudix family | SAMN05421847_0484 | Not Available | Positive | 493826 - 494572 | 29101.9 |
| glutaryl-coa dehydrogenase | SAMN05421847_0485 | Not Available | Positive | 494628 - 495809 | 43500.4 |
| pd-(d/e)xk nuclease superfamily protein | SAMN05421847_0486 | Not Available | Negative | 495802 - 498519 | 106115.0 |
| 16s rrna m(7)g-527 methyltransferase | SAMN05421847_0487 | Not Available | Negative | 498693 - 499328 | 24070.2 |
| aspartate aminotransferase | SAMN05421847_0488 | Not Available | Positive | 499423 - 500628 | 44965.8 |
| peroxiredoxin (alkyl hydroperoxide reductase subunit c) | SAMN05421847_0489 | Not Available | Positive | 500745 - 501377 | 23932.2 |
| thiol-disulfide isomerase or thioredoxin | SAMN05421847_0490 | Not Available | Positive | 501445 - 501753 | 11726.9 |
| hypothetical protein | SAMN05421847_0491 | Not Available | Positive | 501851 - 502102 | 9241.97 |
| methionyl aminopeptidase | SAMN05421847_0492 | Not Available | Negative | 502162 - 502971 | 29782.9 |
| hypothetical protein | SAMN05421847_0493 | Not Available | Negative | 503016 - 503447 | 16706.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
