Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna polymerase iii, alpha subunit | SAMN05421847_0412 | Not Available | Positive | 415797 - 418850 | 117561.0 |
| nicotinamidase/pyrazinamidase | SAMN05421847_0413 | Not Available | Negative | 419016 - 419621 | 22645.0 |
| dinb superfamily protein | SAMN05421847_0414 | Not Available | Positive | 419744 - 420280 | 21338.5 |
| bacillithiol system protein ytxj | SAMN05421847_0415 | Not Available | Positive | 420394 - 420789 | 15315.9 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN05421847_0416 | Not Available | Positive | 420791 - 421366 | 22164.4 |
| adenosine deaminase | SAMN05421847_0417 | Not Available | Positive | 421385 - 422398 | 38637.1 |
| phosphatidylserine decarboxylase | SAMN05421847_0418 | Not Available | Negative | 422511 - 423485 | 36949.0 |
| rna polymerase primary sigma factor | SAMN05421847_0419 | Not Available | Negative | 423609 - 424475 | 32930.8 |
| hypothetical protein | SAMN05421847_0420 | Not Available | Positive | 424626 - 425225 | 22246.3 |
| mfs transporter, nhs family, xanthosine permease | SAMN05421847_0421 | Not Available | Positive | 425233 - 426492 | 47147.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
