Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-ala | Not Available | Not Available | Positive | 403817 - 403890 | Not Available |
| oxygen-independent coproporphyrinogen-3 oxidase | SAMN05421847_0402 | Not Available | Positive | 404152 - 405513 | 52478.4 |
| hypothetical protein | SAMN05421847_0403 | Not Available | Negative | 405559 - 406572 | 38582.2 |
| hypothetical protein | SAMN05421847_0404 | Not Available | Negative | 406678 - 407277 | 23825.8 |
| hypothetical protein | SAMN05421847_0405 | Not Available | Positive | 407393 - 408226 | 31634.5 |
| hypothetical protein | SAMN05421847_0406 | Not Available | Positive | 408242 - 409246 | 38618.6 |
| secd/secf fusion protein | SAMN05421847_0407 | Not Available | Positive | 409463 - 412381 | 106385.0 |
| putative sos response-associated peptidase yedk | SAMN05421847_0408 | Not Available | Positive | 412552 - 413205 | 25127.9 |
| dna-binding transcriptional regulator, xre-family hth domain | SAMN05421847_0409 | Not Available | Negative | 413550 - 414308 | 29283.6 |
| dna polymerase-4 | SAMN05421847_0410 | Not Available | Positive | 414371 - 415525 | 43401.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
