Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| topoisomerase-4 subunit b | SAMN05421847_0380 | Not Available | Positive | 380651 - 382531 | 71478.6 |
| hypothetical protein | SAMN05421847_0381 | Not Available | Positive | 382542 - 383033 | 19181.1 |
| topoisomerase-4 subunit a | SAMN05421847_0382 | Not Available | Positive | 383030 - 385624 | 98811.9 |
| membrane associated serine protease, rhomboid family | SAMN05421847_0383 | Not Available | Positive | 385633 - 386289 | 24352.4 |
| hypothetical protein | SAMN05421847_0385 | Not Available | Positive | 386691 - 386834 | 5589.97 |
| release factor glutamine methyltransferase | SAMN05421847_0386 | Not Available | Negative | 386939 - 387781 | 32176.5 |
| hypothetical protein | SAMN05421847_0387 | Not Available | Negative | 387778 - 388536 | 29360.5 |
| hypothetical protein | SAMN05421847_0388 | Not Available | Positive | 388784 - 389215 | 16267.5 |
| f5/8 type c domain-containing protein | SAMN05421847_0389 | Not Available | Positive | 389348 - 391105 | 67713.5 |
| protein n-acetyltransferase, rimj/riml family | SAMN05421847_0390 | Not Available | Positive | 391121 - 391654 | 21196.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
