Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna-splicing ligase rtcb, repairs trna damage | SAMN05421847_0348 | Not Available | Negative | 350566 - 351945 | 51889.4 |
| hopj type iii effector protein | SAMN05421847_0349 | Not Available | Positive | 352045 - 352383 | 12904.0 |
| predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domains | SAMN05421847_0351 | Not Available | Positive | 352547 - 353548 | 39390.4 |
| hypothetical protein | SAMN05421847_0352 | Not Available | Negative | 353616 - 354326 | 27075.5 |
| uncharacterized conserved protein, duf1501 family | SAMN05421847_0353 | Not Available | Negative | 354402 - 355589 | 44753.0 |
| protein of unknown function | SAMN05421847_0354 | Not Available | Negative | 355668 - 357047 | 52668.6 |
| glucokinase | SAMN05421847_0355 | Not Available | Positive | 357195 - 358247 | 39596.3 |
| polyisoprenoid-binding protein ycei | SAMN05421847_0356 | Not Available | Positive | 358311 - 358877 | 20879.2 |
| hypothetical protein | SAMN05421847_0357 | Not Available | Positive | 358938 - 359579 | 24633.3 |
| hypothetical protein | SAMN05421847_0358 | Not Available | Positive | 359634 - 360047 | 15840.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
