Chryseobacterium humi strain DSM 21580

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Halpernia

Description

Chryseobacterium humi strain DSM 21580 is a Gram-negative, non-motile bacterium characterized by its rod shape. This strain is aerobic, requiring oxygen for growth, and thrives optimally at a temperature of 29°C, placing it within the mesophilic temperature range. The genetic makeup of this strain is indicated by the presence of a single replicon, and its genomic data can be accessed under the accession number FNUS00000000.1. The traits of Chryseobacterium humi suggest a role in various ecological niches, particularly in environments where aerobic conditions prevail. Its mesophilic nature indicates adaptability to moderate temperature ranges, which are common in many terrestrial ecosystems. As a member of the Chryseobacterium genus, this strain may contribute to the decomposition of organic matter, playing a potential role in nutrient cycling within its habitat. Understanding the ecological role of such bacteria is crucial, as they can influence soil health and the overall functioning of ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusHalpernia
SpeciesHalpernia humi
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chryseobacterium humi strain DSM 21580 genome assembly, contig:

Gene Summary

Adenine Count

1047777 bp

Thymine Count

1041008 bp

Guanine Count

517458 bp

Cytosine Count

514943 bp

Genome Length

3121186 bp

Protein-coding Genes

2872 genes

Non-Coding Genes

38 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rna-splicing ligase rtcb, repairs trna damageSAMN05421847_0348Not AvailableNegative350566 - 35194551889.4
hopj type iii effector proteinSAMN05421847_0349Not AvailablePositive352045 - 35238312904.0
predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domainsSAMN05421847_0351Not AvailablePositive352547 - 35354839390.4
hypothetical proteinSAMN05421847_0352Not AvailableNegative353616 - 35432627075.5
uncharacterized conserved protein, duf1501 familySAMN05421847_0353Not AvailableNegative354402 - 35558944753.0
protein of unknown functionSAMN05421847_0354Not AvailableNegative355668 - 35704752668.6
glucokinaseSAMN05421847_0355Not AvailablePositive357195 - 35824739596.3
polyisoprenoid-binding protein yceiSAMN05421847_0356Not AvailablePositive358311 - 35887720879.2
hypothetical proteinSAMN05421847_0357Not AvailablePositive358938 - 35957924633.3
hypothetical proteinSAMN05421847_0358Not AvailablePositive359634 - 36004715840.3

Displaying genes 341 – 350 of 2910 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.