Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| crp/fnr family transcriptional regulator, anaerobic regulatory protein | SAMN05421847_0337 | Not Available | Negative | 342098 - 342706 | 23290.5 |
| hypothetical protein | SAMN05421847_0338 | Not Available | Negative | 342791 - 343384 | 22078.9 |
| small subunit ribosomal protein s15 | SAMN05421847_0339 | Not Available | Positive | 343548 - 343817 | 10140.5 |
| hypothetical protein | SAMN05421847_0340 | Not Available | Positive | 343930 - 344160 | 8989.82 |
| plasmid stabilization system protein pare | SAMN05421847_0341 | Not Available | Positive | 344173 - 344460 | 11543.2 |
| polyribonucleotide nucleotidyltransferase | SAMN05421847_0342 | Not Available | Positive | 344788 - 346965 | 80607.9 |
| hypothetical protein | SAMN05421847_0344 | Not Available | Positive | 347374 - 347700 | 12565.0 |
| hypothetical protein | SAMN05421847_0345 | Not Available | Positive | 347697 - 348386 | 26754.3 |
| hypothetical protein | SAMN05421847_0346 | Not Available | Positive | 348470 - 349807 | 52142.3 |
| hopj type iii effector protein | SAMN05421847_0347 | Not Available | Positive | 349968 - 350300 | 12664.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
