Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c-type biogenesis protein ccsb | SAMN05421847_0327 | Not Available | Positive | 328352 - 331657 | 124458.0 |
| substrate-binding protein | SAMN05421847_0328 | Not Available | Negative | 332095 - 332820 | 28133.2 |
| magnesium transporter | SAMN05421847_0329 | Not Available | Negative | 332830 - 334146 | 49426.1 |
| protein of unknown function | SAMN05421847_0330 | Not Available | Negative | 334496 - 334702 | 7484.3 |
| hypothetical protein | SAMN05421847_0331 | Not Available | Negative | 334734 - 335039 | 11534.7 |
| multidrug efflux pump subunit acrb | SAMN05421847_0332 | Not Available | Negative | 335095 - 338328 | 119436.0 |
| rnd family efflux transporter, mfp subunit | SAMN05421847_0333 | Not Available | Negative | 338419 - 339498 | 38489.8 |
| outer membrane protein tolc | SAMN05421847_0334 | Not Available | Negative | 339504 - 340799 | 50057.5 |
| peroxiredoxin, sacol1771 subfamily | SAMN05421847_0335 | Not Available | Negative | 341115 - 341549 | 16125.3 |
| rhodanese-related sulfurtransferase | SAMN05421847_0336 | Not Available | Negative | 341555 - 341866 | 11291.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
