Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| deoxyribodipyrimidine photo-lyase | SAMN05421847_0316 | Not Available | Negative | 318378 - 319481 | 43106.0 |
| tigr03643 family protein | SAMN05421847_0317 | Not Available | Negative | 319478 - 319756 | 10967.5 |
| probable dna metabolism protein | SAMN05421847_0318 | Not Available | Negative | 319797 - 320561 | 30813.2 |
| putative dna modification/repair radical sam protein | SAMN05421847_0319 | Not Available | Negative | 320562 - 321821 | 48127.4 |
| probable addiction module antidote protein | SAMN05421847_0320 | Not Available | Negative | 321963 - 322247 | 9992.99 |
| putative addiction module killer protein | SAMN05421847_0321 | Not Available | Negative | 322253 - 322552 | 11815.5 |
| peptide-methionine (s)-s-oxide reductase | SAMN05421847_0323 | Not Available | Negative | 322866 - 323360 | 19023.1 |
| lipopolysaccharide export system permease protein | SAMN05421847_0324 | Not Available | Negative | 323498 - 324952 | 56093.7 |
| outer membrane lipoprotein-sorting protein | SAMN05421847_0325 | Not Available | Negative | 325024 - 325665 | 24481.4 |
| dna segregation atpase ftsk/spoiiie, s-dna-t family | SAMN05421847_0326 | Not Available | Negative | 325804 - 328224 | 89533.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
