Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lrp/asnc family transcriptional regulator, regulator for asna, asnc and gida | SAMN05421847_0306 | Not Available | Positive | 310887 - 311357 | 17850.8 |
| hypothetical protein | SAMN05421847_0307 | Not Available | Positive | 311430 - 311804 | 14499.0 |
| rhs repeat-associated core domain-containing protein | SAMN05421847_0308 | Not Available | Positive | 311812 - 312771 | 36101.0 |
| hypothetical protein | SAMN05421847_0309 | Not Available | Positive | 312776 - 313279 | 20031.4 |
| rep element-mobilizing transposase rayt | SAMN05421847_0310 | Not Available | Positive | 313453 - 314025 | 22502.0 |
| hypothetical protein | SAMN05421847_0311 | Not Available | Positive | 313982 - 314389 | 15119.8 |
| hypothetical protein | SAMN05421847_0312 | Not Available | Positive | 314399 - 314806 | 15702.8 |
| integrase core domain-containing protein | SAMN05421847_0313 | Not Available | Negative | 315135 - 315791 | 25396.7 |
| deoxyribodipyrimidine photolyase-related protein | SAMN05421847_0314 | Not Available | Negative | 315936 - 317411 | 58400.0 |
| nadh-fmn oxidoreductase rutf, flavin reductase (dim6/ntab) family | SAMN05421847_0315 | Not Available | Negative | 317625 - 318251 | 23484.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
