Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421847_0285 | Not Available | Negative | 285221 - 285328 | 4194.33 |
| isocitrate dehydrogenase | SAMN05421847_0286 | Not Available | Negative | 285372 - 287582 | 81744.4 |
| thiol peroxidase, atypical 2-cys peroxiredoxin | SAMN05421847_0287 | Not Available | Positive | 287883 - 288380 | 17748.0 |
| predicted transcriptional regulator | SAMN05421847_0288 | Not Available | Negative | 288656 - 289117 | 18140.5 |
| hypothetical protein | SAMN05421847_0289 | Not Available | Negative | 289126 - 289707 | 22657.5 |
| pyruvate dehydrogenase e1 component alpha subunit | SAMN05421847_0290 | Not Available | Positive | 289832 - 290833 | 38095.1 |
| pyruvate dehydrogenase e2 component (dihydrolipoamide acetyltransferase) | SAMN05421847_0291 | Not Available | Positive | 290911 - 292536 | 58176.0 |
| hypothetical protein | SAMN05421847_0292 | Not Available | Positive | 292867 - 293430 | 20881.3 |
| lipoprotein-releasing system atp-binding protein | SAMN05421847_0293 | Not Available | Positive | 293540 - 294208 | 24843.9 |
| l,d-transpeptidase catalytic domain | SAMN05421847_0294 | Not Available | Positive | 294269 - 294880 | 23172.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
