Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc-type transport system involved in multi-copper enzyme maturation, permease component | SAMN05421847_0262 | Not Available | Negative | 259359 - 260204 | 32916.1 |
| abc-2 type transport system atp-binding protein | SAMN05421847_0263 | Not Available | Negative | 260206 - 261096 | 32854.1 |
| glycine/d-amino acid oxidase | SAMN05421847_0264 | Not Available | Positive | 261224 - 262327 | 41803.9 |
| peptide chain release factor 2 | SAMN05421847_0265 | Not Available | Positive | 262447 - 263559 | 42424.2 |
| membrane-associated protein | SAMN05421847_0267 | Not Available | Positive | 263845 - 264510 | 25500.8 |
| putative auto-transporter adhesin, head gin domain | SAMN05421847_0268 | Not Available | Negative | 264616 - 265434 | 28672.4 |
| peptidyl-dipeptidase dcp | SAMN05421847_0269 | Not Available | Positive | 265508 - 267658 | 80123.5 |
| protein of unknown function | SAMN05421847_0271 | Not Available | Positive | 268037 - 268486 | 16690.4 |
| ribosomal protein l11 methyltransferase | SAMN05421847_0272 | Not Available | Negative | 268537 - 269517 | 37396.8 |
| predicted zn-dependent peptidase | SAMN05421847_0273 | Not Available | Positive | 269617 - 272484 | 110119.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
