Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| superfamily ii dna and rna helicase | SAMN05421847_0009 | Not Available | Positive | 5629 - 6936 | 49203.1 |
| hypothetical protein | SAMN05421847_0010 | Not Available | Positive | 6968 - 7507 | 21442.5 |
| dna-binding transcriptional regulator, merr family | SAMN05421847_0011 | Not Available | Positive | 7585 - 7914 | 12481.2 |
| hypothetical protein | SAMN05421847_0012 | Not Available | Negative | 7911 - 8351 | 16553.7 |
| pp_00013 | SAMN05421847_0013 | Not Available | Negative | 8430 - 9419 | Not Available |
| uncharacterized iron-regulated protein | SAMN05421847_0014 | Not Available | Negative | 9482 - 10351 | 33389.1 |
| hypothetical protein | SAMN05421847_0015 | Not Available | Negative | 10406 - 13639 | 123711.0 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421847_0016 | Not Available | Positive | 13734 - 14507 | 26581.4 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421847_0017 | Not Available | Positive | 14601 - 15416 | 28395.9 |
| hypothetical protein | SAMN05421847_0018 | Not Available | Positive | 15503 - 16063 | 20135.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
