Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glyoxylase, beta-lactamase superfamily ii | SAMN05421847_1954 | Not Available | Positive | 2021938 - 2023041 | 40261.7 |
| predicted arabinose efflux permease, mfs family | SAMN05421847_1956 | Not Available | Positive | 2023447 - 2024691 | 45164.3 |
| hydroxyacylglutathione hydrolase | SAMN05421847_1957 | Not Available | Positive | 2024723 - 2026258 | 56788.9 |
| rhodanese-related sulfurtransferase | SAMN05421847_1959 | Not Available | Positive | 2027479 - 2027793 | 11218.4 |
| thiopurine s-methyltransferase (tpmt) | SAMN05421847_1960 | Not Available | Positive | 2027786 - 2028415 | 23809.2 |
| hypothetical protein | SAMN05421847_1961 | Not Available | Negative | 2028371 - 2028601 | 8617.63 |
| copper chaperone copz | SAMN05421847_1962 | Not Available | Positive | 2028626 - 2028883 | 9218.36 |
| hypothetical protein | SAMN05421847_1963 | Not Available | Positive | 2028886 - 2029119 | 8811.94 |
| methyltransferase domain-containing protein | SAMN05421847_1964 | Not Available | Positive | 2029133 - 2029777 | 24643.3 |
| hypothetical protein | SAMN05421847_1967 | Not Available | Positive | 2030533 - 2031030 | 18888.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
