Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bacteroides conjugative transposon tram protein | SAMN05421847_1934 | Not Available | Negative | 2002528 - 2003877 | 49271.0 |
| hypothetical protein | SAMN05421847_1935 | Not Available | Negative | 2003864 - 2004151 | 11342.8 |
| hypothetical protein | SAMN05421847_1936 | Not Available | Negative | 2004175 - 2004603 | 16016.2 |
| bacteroides conjugative transposon trak protein | SAMN05421847_1937 | Not Available | Negative | 2004615 - 2005238 | 24135.7 |
| bacteroides conjugative transposon traj protein | SAMN05421847_1938 | Not Available | Negative | 2005258 - 2006253 | 36587.8 |
| protein of unknown function | SAMN05421847_1939 | Not Available | Negative | 2006256 - 2006888 | 23779.6 |
| bacteroides conjugation system atpase, trag family | SAMN05421847_1940 | Not Available | Negative | 2006918 - 2009422 | 95928.5 |
| protein of unknown function | SAMN05421847_1941 | Not Available | Negative | 2009763 - 2010068 | 10600.9 |
| transcriptional regulator, arsr family | SAMN05421847_1942 | Not Available | Positive | 2010461 - 2010838 | 14189.4 |
| copper ion binding protein | SAMN05421847_1943 | Not Available | Positive | 2010835 - 2011440 | 21819.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
