Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glutamate-1-semialdehyde 2,1-aminomutase | SAMN05421847_1858 | Not Available | Positive | 1931942 - 1933228 | 47178.2 |
| 2,4-dienoyl-coa reductase | SAMN05421847_1861 | Not Available | Negative | 1933886 - 1934935 | 38885.3 |
| cytidine deaminase | SAMN05421847_1862 | Not Available | Positive | 1935037 - 1935516 | 17852.3 |
| predicted pyrophosphatase or phosphodiesterase, alkp superfamily | SAMN05421847_1863 | Not Available | Negative | 1935657 - 1936922 | 48620.7 |
| iron complex outermembrane recepter protein | SAMN05421847_1864 | Not Available | Negative | 1937071 - 1939302 | 82897.0 |
| hypothetical protein | SAMN05421847_1865 | Not Available | Negative | 1939372 - 1939905 | 21224.1 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421847_1866 | Not Available | Negative | 1940080 - 1943778 | 130981.0 |
| hypothetical protein | SAMN05421847_1867 | Not Available | Negative | 1943789 - 1944079 | 11169.5 |
| protein of unknown function | SAMN05421847_1868 | Not Available | Negative | 1944423 - 1944731 | 11468.6 |
| dna-directed rna polymerase subunit beta' | SAMN05421847_1869 | Not Available | Negative | 1944840 - 1949105 | 157821.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
