Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna gyrase subunit a | SAMN05421847_0171 | Not Available | Positive | 162125 - 164752 | 98480.7 |
| tetratricopeptide repeat-containing protein | SAMN05421847_0172 | Not Available | Positive | 164787 - 166181 | 51255.8 |
| iron (metal) dependent repressor, dtxr family | SAMN05421847_0173 | Not Available | Negative | 166225 - 166875 | 25252.9 |
| l-threonine aldolase | SAMN05421847_0174 | Not Available | Positive | 167009 - 168043 | 38408.9 |
| peptidase family m28 | SAMN05421847_0175 | Not Available | Positive | 168045 - 169385 | 49937.3 |
| atp-binding protein involved in chromosome partitioning | SAMN05421847_0176 | Not Available | Positive | 169553 - 170677 | 40690.6 |
| nifu-like domain-containing protein | SAMN05421847_0177 | Not Available | Positive | 170681 - 170929 | 9074.13 |
| lysophospholipase l1 | SAMN05421847_0178 | Not Available | Negative | 171076 - 171849 | 29493.2 |
| exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase | SAMN05421847_0179 | Not Available | Negative | 171892 - 172788 | 33570.0 |
| polyphosphate kinase | SAMN05421847_0180 | Not Available | Negative | 172871 - 174931 | 79946.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
