Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosidase | SAMN05421847_1815 | Not Available | Negative | 1892583 - 1893932 | 51943.6 |
| pria4b orf-3-like protein | SAMN05421847_1816 | Not Available | Negative | 1894018 - 1894578 | 21529.9 |
| hypothetical protein | SAMN05421847_1817 | Not Available | Positive | 1894651 - 1894740 | 3351.22 |
| two-component system, ompr family, phosphate regulon sensor histidine kinase phor | SAMN05421847_1818 | Not Available | Negative | 1894695 - 1895723 | 39424.1 |
| two-component system, ompr family, alkaline phosphatase synthesis response regulator phop | SAMN05421847_1819 | Not Available | Negative | 1895732 - 1896409 | 25613.4 |
| outer membrane receptor proteins, mostly fe transport | SAMN05421847_1820 | Not Available | Positive | 1896850 - 1899351 | 93821.3 |
| hypothetical protein | SAMN05421847_1821 | Not Available | Positive | 1899384 - 1900607 | 42781.4 |
| ribonuclease inhibitor | SAMN05421847_1822 | Not Available | Negative | 1900713 - 1900994 | 10845.5 |
| archaemetzincin | SAMN05421847_1823 | Not Available | Negative | 1900996 - 1901595 | 22982.0 |
| ribonuclease | SAMN05421847_1824 | Not Available | Negative | 1901592 - 1902089 | 18844.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
