Chryseobacterium humi strain DSM 21580

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Halpernia

Description

Chryseobacterium humi strain DSM 21580 is a Gram-negative, non-motile bacterium characterized by its rod shape. This strain is aerobic, requiring oxygen for growth, and thrives optimally at a temperature of 29°C, placing it within the mesophilic temperature range. The genetic makeup of this strain is indicated by the presence of a single replicon, and its genomic data can be accessed under the accession number FNUS00000000.1. The traits of Chryseobacterium humi suggest a role in various ecological niches, particularly in environments where aerobic conditions prevail. Its mesophilic nature indicates adaptability to moderate temperature ranges, which are common in many terrestrial ecosystems. As a member of the Chryseobacterium genus, this strain may contribute to the decomposition of organic matter, playing a potential role in nutrient cycling within its habitat. Understanding the ecological role of such bacteria is crucial, as they can influence soil health and the overall functioning of ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusHalpernia
SpeciesHalpernia humi
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chryseobacterium humi strain DSM 21580 genome assembly, contig:

Gene Summary

Adenine Count

1047777 bp

Thymine Count

1041008 bp

Guanine Count

517458 bp

Cytosine Count

514943 bp

Genome Length

3121186 bp

Protein-coding Genes

2872 genes

Non-Coding Genes

38 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
beta-barrel assembly machine subunit bamaSAMN05421847_1772Not AvailableNegative1843766 - 184631895102.7
undecaprenyl diphosphate synthaseSAMN05421847_1773Not AvailableNegative1846340 - 184714330886.2
outer membrane protein beta-barrel domain-containing proteinSAMN05421847_1774Not AvailableNegative1847094 - 184794532139.0
capsular exopolysaccharide familySAMN05421847_1775Not AvailableNegative1848181 - 185067094023.3
protein involved in gliding motility epsaSAMN05421847_1776Not AvailableNegative1850675 - 185154431719.9
udp-n-acetylmuramyl pentapeptide phosphotransferase/udp-n-acetylglucosamine-1-phosphate transferaseSAMN05421847_1777Not AvailableNegative1851555 - 185267042181.3
epsg family proteinSAMN05421847_1778Not AvailableNegative1852675 - 185380243928.7
glycosyltransferase involved in cell wall bisynthesisSAMN05421847_1779Not AvailableNegative1853819 - 185480838797.8
glycosyltransferase, gt2 familySAMN05421847_1780Not AvailableNegative1854973 - 185597438203.0
putative n6-adenine-specific dna methylaseSAMN05421847_1781Not AvailableNegative1856034 - 185720345056.1

Displaying genes 1711 – 1720 of 2910 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.