Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN05421847_1722 | Not Available | Negative | 1795445 - 1797181 | 63576.4 |
| rod shape determining protein roda | SAMN05421847_1723 | Not Available | Negative | 1797496 - 1798722 | 45317.9 |
| penicillin-binding protein 2 | SAMN05421847_1724 | Not Available | Negative | 1798719 - 1800707 | 74095.3 |
| hypothetical protein | SAMN05421847_1725 | Not Available | Negative | 1800704 - 1801210 | 19661.7 |
| rod shape-determining protein mrec | SAMN05421847_1726 | Not Available | Negative | 1801203 - 1802042 | 31139.7 |
| rod shape-determining protein mreb | SAMN05421847_1727 | Not Available | Negative | 1802081 - 1803106 | 37236.8 |
| hypothetical protein | SAMN05421847_1728 | Not Available | Positive | 1803253 - 1803696 | 17050.4 |
| glutamyl-trna reductase | SAMN05421847_1729 | Not Available | Positive | 1803744 - 1805018 | 48651.6 |
| hydroxymethylbilane synthase | SAMN05421847_1730 | Not Available | Positive | 1805005 - 1805916 | 34132.2 |
| dna-(apurinic or apyrimidinic site) lyase /endonuclease iii | SAMN05421847_1731 | Not Available | Negative | 1805917 - 1806537 | 23399.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
