Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421847_1700 | Not Available | Positive | 1767597 - 1767746 | 5704.99 |
| phosphomannomutase | SAMN05421847_1701 | Not Available | Positive | 1767827 - 1769209 | 50425.5 |
| tetratricopeptide repeat-containing protein | SAMN05421847_1702 | Not Available | Positive | 1769354 - 1770724 | 54018.1 |
| hypothetical protein | SAMN05421847_1704 | Not Available | Negative | 1771049 - 1772323 | 49739.8 |
| uncharacterized conserved protein ydiu, upf0061 family | SAMN05421847_1705 | Not Available | Negative | 1772515 - 1774053 | 59326.1 |
| penicillin-binding protein 1a | SAMN05421847_1706 | Not Available | Negative | 1774128 - 1776503 | 89629.5 |
| gliding motility-associated lipoprotein gldh | SAMN05421847_1707 | Not Available | Negative | 1776508 - 1776969 | 17631.3 |
| cell fate regulator yaat, psp1 superfamily (controls sporulation, competence, biofilm development) | SAMN05421847_1708 | Not Available | Negative | 1776962 - 1778242 | 48203.2 |
| long-chain fatty acid transport protein | SAMN05421847_1709 | Not Available | Positive | 1778568 - 1779815 | 45231.4 |
| gdsl-like lipase/acylhydrolase | SAMN05421847_1710 | Not Available | Positive | 1779829 - 1781328 | 51719.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
