Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna uridine 5-carboxymethylaminomethyl modification enzyme | SAMN05421847_1670 | Not Available | Positive | 1736437 - 1738299 | 69264.3 |
| permuted papain-like amidase enzyme, yaef/yiix, c92 family | SAMN05421847_1671 | Not Available | Positive | 1738332 - 1738952 | 23742.7 |
| 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase | SAMN05421847_1672 | Not Available | Positive | 1738959 - 1739783 | 31888.3 |
| hypothetical protein | SAMN05421847_1673 | Not Available | Negative | 1739820 - 1740464 | 25535.5 |
| phosphoglycerate kinase | SAMN05421847_1674 | Not Available | Negative | 1740472 - 1741662 | 43200.9 |
| ribose 5-phosphate isomerase b | SAMN05421847_1675 | Not Available | Positive | 1742291 - 1742722 | 15891.8 |
| rnase r | SAMN05421847_1676 | Not Available | Positive | 1742866 - 1745022 | 82522.5 |
| threonine/homoserine/homoserine lactone efflux protein | SAMN05421847_1677 | Not Available | Positive | 1745062 - 1745745 | 25951.4 |
| muramoyltetrapeptide carboxypeptidase | SAMN05421847_1678 | Not Available | Positive | 1745742 - 1746674 | 34939.4 |
| uncharacterized membrane protein | SAMN05421847_1679 | Not Available | Positive | 1746679 - 1747029 | 13729.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
