Chryseobacterium humi strain DSM 21580

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Halpernia

Description

Chryseobacterium humi strain DSM 21580 is a Gram-negative, non-motile bacterium characterized by its rod shape. This strain is aerobic, requiring oxygen for growth, and thrives optimally at a temperature of 29°C, placing it within the mesophilic temperature range. The genetic makeup of this strain is indicated by the presence of a single replicon, and its genomic data can be accessed under the accession number FNUS00000000.1. The traits of Chryseobacterium humi suggest a role in various ecological niches, particularly in environments where aerobic conditions prevail. Its mesophilic nature indicates adaptability to moderate temperature ranges, which are common in many terrestrial ecosystems. As a member of the Chryseobacterium genus, this strain may contribute to the decomposition of organic matter, playing a potential role in nutrient cycling within its habitat. Understanding the ecological role of such bacteria is crucial, as they can influence soil health and the overall functioning of ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusHalpernia
SpeciesHalpernia humi
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chryseobacterium humi strain DSM 21580 genome assembly, contig:

Gene Summary

Adenine Count

1047777 bp

Thymine Count

1041008 bp

Guanine Count

517458 bp

Cytosine Count

514943 bp

Genome Length

3121186 bp

Protein-coding Genes

2872 genes

Non-Coding Genes

38 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trna uridine 5-carboxymethylaminomethyl modification enzymeSAMN05421847_1670Not AvailablePositive1736437 - 173829969264.3
permuted papain-like amidase enzyme, yaef/yiix, c92 familySAMN05421847_1671Not AvailablePositive1738332 - 173895223742.7
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylaseSAMN05421847_1672Not AvailablePositive1738959 - 173978331888.3
hypothetical proteinSAMN05421847_1673Not AvailableNegative1739820 - 174046425535.5
phosphoglycerate kinaseSAMN05421847_1674Not AvailableNegative1740472 - 174166243200.9
ribose 5-phosphate isomerase bSAMN05421847_1675Not AvailablePositive1742291 - 174272215891.8
rnase rSAMN05421847_1676Not AvailablePositive1742866 - 174502282522.5
threonine/homoserine/homoserine lactone efflux proteinSAMN05421847_1677Not AvailablePositive1745062 - 174574525951.4
muramoyltetrapeptide carboxypeptidaseSAMN05421847_1678Not AvailablePositive1745742 - 174667434939.4
uncharacterized membrane proteinSAMN05421847_1679Not AvailablePositive1746679 - 174702913729.6

Displaying genes 1611 – 1620 of 2910 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.