Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| aspartate racemase | SAMN05421847_1659 | Not Available | Negative | 1725273 - 1725935 | 25398.7 |
| dimethylhistidine n-methyltransferase | SAMN05421847_1660 | Not Available | Negative | 1725932 - 1726885 | 36870.2 |
| ergothioneine biosynthesis protein egtb | SAMN05421847_1661 | Not Available | Negative | 1726882 - 1728033 | 45802.1 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | SAMN05421847_1662 | Not Available | Negative | 1728150 - 1728893 | 26283.7 |
| 16s rrna (cytidine1402-2'-o)-methyltransferase | SAMN05421847_1663 | Not Available | Negative | 1728950 - 1729621 | 24936.2 |
| hypothetical protein | SAMN05421847_1664 | Not Available | Negative | 1729622 - 1730638 | 39652.6 |
| thymidine kinase | SAMN05421847_1665 | Not Available | Positive | 1730699 - 1731286 | 21876.2 |
| alanine racemase | SAMN05421847_1666 | Not Available | Positive | 1731283 - 1733730 | 92882.5 |
| nte family protein | SAMN05421847_1667 | Not Available | Positive | 1733734 - 1735878 | 80346.6 |
| rrna maturation rnase ybey | SAMN05421847_1668 | Not Available | Positive | 1735887 - 1736294 | 16005.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
