Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted phosphotransferase, aminoglycoside/choline kinase (aph/chok) family | SAMN05421847_1608 | Not Available | Negative | 1678341 - 1679321 | 38337.1 |
| exosortase family protein xrtf | SAMN05421847_1609 | Not Available | Positive | 1679369 - 1679902 | 20955.4 |
| exosortase f-associated protein | SAMN05421847_1610 | Not Available | Positive | 1679904 - 1680347 | 17622.3 |
| cation diffusion facilitator family transporter | SAMN05421847_1611 | Not Available | Negative | 1680451 - 1681452 | 37842.1 |
| aspartate-semialdehyde dehydrogenase | SAMN05421847_1612 | Not Available | Negative | 1681483 - 1682472 | 36348.9 |
| hypothetical protein | SAMN05421847_1613 | Not Available | Negative | 1682668 - 1683108 | 16494.2 |
| outer membrane receptor proteins, mostly fe transport | SAMN05421847_1614 | Not Available | Negative | 1683188 - 1685740 | 93242.8 |
| nicotinate-nucleotide pyrophosphorylase | SAMN05421847_1615 | Not Available | Negative | 1685918 - 1686784 | 32225.2 |
| thiosulfate/3-mercaptopyruvate sulfurtransferase | SAMN05421847_1616 | Not Available | Negative | 1686838 - 1687686 | 31682.5 |
| hypothetical protein | SAMN05421847_1617 | Not Available | Negative | 1687683 - 1688384 | 27805.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
