Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN05421847_1598 | Not Available | Negative | 1667526 - 1668509 | 38233.9 |
| membrane associated serine protease, rhomboid family | SAMN05421847_1599 | Not Available | Negative | 1668512 - 1669243 | 27291.3 |
| dna mismatch repair protein mutl | SAMN05421847_1600 | Not Available | Negative | 1669253 - 1671013 | 67737.4 |
| protein of unknown function | SAMN05421847_1601 | Not Available | Negative | 1671514 - 1672737 | 46399.1 |
| predicted membrane protein | SAMN05421847_1602 | Not Available | Negative | 1672721 - 1675222 | 95452.5 |
| hypothetical protein | SAMN05421847_1603 | Not Available | Negative | 1675325 - 1675795 | 17481.0 |
| hypothetical protein | SAMN05421847_1604 | Not Available | Negative | 1675837 - 1676556 | 27068.5 |
| nucleotidyl transferase | SAMN05421847_1605 | Not Available | Negative | 1676553 - 1677266 | 26854.5 |
| upf0042 nucleotide-binding protein | SAMN05421847_1606 | Not Available | Negative | 1677323 - 1677733 | 15478.5 |
| gxxexxy protein | SAMN05421847_1607 | Not Available | Negative | 1677831 - 1678235 | 15428.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
