Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphatidate cytidylyltransferase | SAMN05421847_1588 | Not Available | Negative | 1657514 - 1658395 | 33638.8 |
| uncharacterised acr, ykgg family cog1556 | SAMN05421847_1589 | Not Available | Negative | 1658431 - 1659012 | 21756.1 |
| cell division protease ftsh | SAMN05421847_1590 | Not Available | Negative | 1659098 - 1661077 | 73199.4 |
| ribosome-associated protein | SAMN05421847_1591 | Not Available | Negative | 1661121 - 1661483 | 13653.0 |
| bira family transcriptional regulator, biotin operon repressor / biotin-[acetyl-coa-carboxylase] ligase | SAMN05421847_1592 | Not Available | Positive | 1661569 - 1662273 | 27101.9 |
| lipopolysaccharide export system permease protein | SAMN05421847_1593 | Not Available | Negative | 1662267 - 1663361 | 41637.1 |
| pp_01519 | SAMN05421847_1594 | Not Available | Negative | 1663381 - 1664514 | Not Available |
| protein of unknown function | SAMN05421847_1595 | Not Available | Negative | 1664523 - 1664933 | 15700.4 |
| dolichol-phosphate mannosyltransferase | SAMN05421847_1596 | Not Available | Negative | 1665084 - 1665815 | 27600.0 |
| gh3 auxin-responsive promoter | SAMN05421847_1597 | Not Available | Positive | 1665913 - 1667430 | 58778.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
